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Phytochemical Analysis and Anti-Biofilm Potential That Cause Dental Caries from Black Cumin Seeds (Nigella sativa Linn.)

Authors Kurnia D , Padilah R, Apriyanti E , Dharsono HDA 

Received 10 December 2023

Accepted for publication 23 April 2024

Published 29 May 2024 Volume 2024:18 Pages 1917—1932

DOI https://doi.org/10.2147/DDDT.S454217

Checked for plagiarism Yes

Review by Single anonymous peer review

Peer reviewer comments 2

Editor who approved publication: Professor Anastasios Lymperopoulos



Dikdik Kurnia,1 Rizal Padilah,1 Eti Apriyanti,1 Hendra Dian Adhita Dharsono2

1Department of Chemistry, Faculty of Mathematics and Natural Science, Universitas Padjadjaran, Sumedang, Indonesia; 2Department of Conservative Dentistry, Faculty of Dentistry, Universitas Padjadjaran, Bandung, Jawa Barat, Indonesia

Correspondence: Dikdik Kurnia, Jl. Raya Bandung Sumedang km.21, Hegarmanah, Jatinangor, Kabupaten, Sumedang, Jawa Barat, 45363, Indonesia, Tel/Fax +62 (022) 7794391, Email [email protected]

Abstract: The oral cavity is an excellent place for various microorganisms to grow. Spectrococcus mutans and Spectrococcus sanguinis are Gram-negative bacteria found in the oral cavity as pioneer biofilm formers on the tooth surface that cause caries. Caries treatment has been done with antibiotics and therapeutics, but the resistance level of S. mutans and S. sanguinis bacteria necessitates the exploration of new drug compounds. Black cumin (Nigella sativa Linn.) is known to contain secondary metabolites that have antioxidant, antibacterial, anti-biofilm, anti-inflammatory and antifungal activities. The purpose of this review article is to present data on the potential of Nigella sativa Linn seeds as anti-biofilm. This article will discuss biofilm-forming bacteria, the resistance mechanism of antibiotics, the bioactivity of N. sativa extracts and seed isolates together with the Structure Activity Relationship (SAR) review of N. sativa compound isolates. We collected data from reliable references that will illustrate the potential of N. sativa seeds as anti-biofilm drug.

Keywords: Nigella sativa Linn, dental caries, antibiotics, anti-biofilm, S. mutans, S. sanguinis

Introduction

The oral cavity is an excellent place for various microorganisms to grow, due to conditions that are always moist by saliva, especially on the surface of the teeth and mucosa. It is estimated that there are 500–1000 species of bacteria and fungi growing in the oral cavity.1,2 Spectrococcus mutans and Spectrococcus sanguinis are known to infect the oral cavity by synthesizing biofilm layer on the tooth surface that forms caries. As a biofilm-forming pioneer, S. mutans signals to other bacteria to form more colonies and strengthen the biofilm. S. sanguinis as one of the bacteria receiving signals from S. mutans cooperates to create a stronger biofilm layer. With the help of the enzyme gluconastransferase, the biofilm layer formed becomes caries.3,4 Dental caries is considered a chronic disease that can affect all groups. In fact, the handling and treatment of caries is still very lacking, which causes this disease to continue.5 In addition, the use of antibiotics as a cure for dental caries is resistant. Treatment is very urgent and new drug alternatives are needed. Nigella sativa Linn. seeds are known to contain bioactive compounds that have potential as an alternative treatment for dental caries.

N. sativa seed extract contains secondary metabolite compounds of terpenoids, alkaloids, flavonoids and phenolics.6,7 Several researchers have reported that the compounds contained in N. sativa seeds have antibacterial, anti-biofilm, anti-inflammatory and antifungal activities.8–10 Bioactivity of N. sativa has potential as a natural caries drug.11 Based on these data, this review will focus on the activity of compounds from N. sativa seeds against biofilm-forming bacteria. This review will also review the Structural Relationship of compounds from N. sativa seeds and the mechanism of inhibition of biofilm-causing bacteria.

Biofilm Forming Gram-Positive and Gram-Negative Bacteria

Gram-Positive Bacteria

Spectrococcus mutans

S. mutans is an anaerobic Gram-positive bacterium found in the oral cavity.12 The condition of the oral cavity always changes in pH, temperature and pressure requiring S. mutans adaptation. This situation causes S. mutans to synthesize new metabolites that change its physiological properties. The resulting consequences such as increased biofilm homeostasis become dental caries.13 S. mutans mediates gluconastransferase (Gtf), which forms extracellular polysaccharides (EPS) on the tooth surface. EPS is formed at the adhesion stage utilizing sucrose with the help of the enzyme gluconastransferase (Gtfs). This enzyme catalyzes the breakdown of sucrose into glucose and fructose. Through glycoside bonds extracellular glucans are formed (EPS). At this stage, the biofilm that forms is still small, followed by the proliferation stage, specific caries bacteria will survive on the biofilm so that caries forms.14 The EPS formed becomes a food source and ensures the survival of biofilm-forming bacterial colonies.14,15 In addition, EPS protects colonies from host attacks and antibiotics. Microorganisms such as Candida albicans, Porphyromonas, Prevotella, Fusobacterium nucleatum and others are incorporated into colonies contained in biofilms.16

Biofilms can be inhibited by stopping the synthesis of EPS catalyzed by Gtf enzymes (shown in Figure 1). This can be done using micro molecules, natural products, probiotics and prebiotics. The introduction of components into EPS results in changes in EPS regulation.17 At this stage, new EPS components are formed that need to be prevented from being occupied by new bacterial colonies using antibiotics. EPS degradation and the presence of antibiotics reduce biofilms and dental caries.18

Figure 1 The mechanism of biofilm inhibition is by inhibiting the gluconastransferase enzyme of S. mutans as a catalyst for EPS formation. Unavailable EPS causes bacteria not to colonize to form biofilms.18

In the biofilm formed by S. mutans, amyloid fibers of different sizes were found. Amyloid fibers are fibers that can protect the biofilm layer from aggregation and environmental influences such as enzymes. S. mutans synthesizes amyloid with the help of the enzyme transpeptidase sortase which connects the substrate and cell wall peptidoglycan. The characterization results of amyloid fibers formed have two different types of sizes and add to the biofilm inhibition route. The presence of molecules that can lyse amyloid fibers can reduce the attachment strength of biofilms.19,20

Streptococcus sangunis

Streptococcus sanguinis (S. sanguinis) is a class of Gram-positive mythical Streptococcus found in toddlers, adolescents and adults.21 Like its main pioneer (S. mutans), it is involved in forming biofilms that synergize with other bacterial species such as Corynebacterium durum.22 Multiple biofilms were observed in OKF4/TERT-1 and hTERT TIGKs artificial cells containing S. sanguinis and C. durum as commensal bacteria and Porphyromonas gingivalis as pathobionts. S. sanguinis contributed almost 96.6% to the multiple biofilms formed by the three species, while C. durum and P. gingivalis only 1.6 and 1.8%, respectively. A very dominant contribution was shown by S. sanguinis in biofilm formation.23 S. sanguinis also has the ability to ferment polysaccharides into acidic compounds. This causes demineralization of enamel in the teeth which initiates caries.24

The close relationship between S. mutans and S. sanguinis affects the biofilm formed. Both support each other providing a source of attachment for other microorganisms.25 However, research conducted by Cui et al membrane vesicles from S. mutans can inhibit biofilm formation from S. sanguinis. This unique property causes biofilm inhibition to be more diverse.26

In addition to biofilm formation, S. sanguinis encodes pili IV in the metabolism that causes infective endocarditis (IE) disease. S. sanguinis can bind to the platelet protein matrix provided by S. mutans on biofilms.27 This results in S. sanguinis being able to exit the oral cavity and be carried by the bloodstream to the heart. The accumulation of S. sanguinis in the heart initiates IE.28

Gram-Negative Bacteria

Aggregatibacter actinomycetemcomitans

Aggregatibacter actinomycetemcomitans (A. actinomycetemcomitans) is a Gram-negative bacterium in the oral cavity.29 A. Actinomycetemcomitans is incorporated into biofilm colonies that affect the rate of biofilm formation. Although not very significant, the gene expression of A. Actinomycetemcomitans in biofilm is most dominant compared to other Gram-negative bacteria (P. Gingivalis, V. dispar, A. oris, and S. anginosus).30

A. Actinomycetemcomitans expresses a fimbriae protein and three non-fimbriae surface proteins (EmaA, Aae and ApiA). These proteins play a role in forming biofilms on the tooth surface. EmaA protein expression is known to be the most dominant in biofilm formation compared to other non-fimbriae proteins.31 OmpA1 and OmpA2 are also expressed which ensures the survival of A. Actinomycetemcomitan. OmpA1 and OmpA2 can interact with C4 binding pockets that inhibit lectin activity. This binding ability is what makes A. Actinomycetemcomitan resistant.32

Antibiotics

Antibiotics are compound species that can inhibit and/or kill a pathogenic microorganism. In the early era, the discovery of antibiotics gave many changes to the world of medicine.33 There was an extension of human lifetime compared to before the discovery of antibiotics.34 A very big discovery turned out to have a big negative impact. In addition to high resistance to antibiotics, massive use has an impact on environmental pollution. Exposure to waste such as in fresh water is difficult to degrade and threatens survival.35

Common Antibiotics Used in Caries Treatment

Rifamycin

Rifamycin is an antibiotic that has an aromatic ring structure (shown in Figure 2). Excellent activity is shown by rifamycin against Gram-positive and Gram-negative bacteria. The mechanism of rifamycin inhibition is through inhibiting the enzyme RNA polymerase (RNAP) which causes RNA synthesis to be inhibited. The structure of rifamycin has hydroquinone which can be auto-oxidized by the enzyme Rox monooxygenase in bacterial cells. Biofilm forming bacteria such as Staphylococcus aureus have the ability to repair genetic information systems. This causes rifamycin to be unable to inhibit RNA synthesis from S. aureus, making it resistant.36–38

Figure 2 Structure of Rifamycin.37

Amoxicillin

Amoxicillin has been used as an antibiotic since 1970 with a chemical structure having a β-lactam ring (shown in Figure 3). Treatment of dental caries infected by Gram-positive and Gram-negative bacteria often uses amoxicillin.39 The inhibitory mechanism of amoxicillin by damaging the bacterial cell wall. Research results show that the use of amoxicillin increases the ability of bacteria to express β-lactamase enzymes that have structures similar to amoxicillin. Expression of β-lactamase enzyme makes bacteria recognize amoxicillin in the next treatment which causes resistance.36 S. sanguinis and S. mitis are caries-causing bacteria that are resistant to amoxicillin.40

Figure 3 β-lactam structure of amoxicillin.41

Chlorhexidine

Chlorhexidine is often used to treat dental caries to date. In the application of chlorhexidine, it is able to change the pH conditions in the oral cavity characterized by differences in the concentration of lactic acid, nitrate and nitrite.42 The attachment of chlorhexidine to the bacterial cell wall is through charged interaction. Bacterial cell walls are negatively charged, while chlorhexidine ions are positively charged so that attachment occurs. Changes in pH in the oral environment cause an imbalance to occur, increasing the ability of microorganisms to express certain proteins. Like the main bacteria that cause dental caries, S. mutans is able to express the dlt operon which changes the surface structure of the cell wall to be very hydrophobic. As a result, the cell wall is positively charged and no ionic interaction with chlorhexidine occurs. The expression of the dlt operon from S. mutans causes it to be resistant to chlorhexidine (shown in Figure 4).43

Figure 4 Bacterial member as a target for chlorhexidine attachment and bacterial member that is resistant to chlorhexidine due to the differential charge on the member surface by DltA.43

Florida Toothpaste

Florida is often used in toothpaste because of its excellent antibiotic activity. Florida can prevent tooth decay caused by pathogenic microorganisms. The tooth surface layer is re-mineralized by fluoride ions resulting in the erosion of dental calcium and phosphate to form the compound fluoride apatite [Ca5(PO4)3F]. Florida apatite is very useful for protecting teeth and preventing biofilm formation. In addition, the presence of chloride can suppress the amount of acid produced by bacteria so that teeth are protected from caries.44,45

The element fluoride has the highest electronegativity value among other chemical elements. Florida can attract electrons from bone and tooth building blocks such as calcium and cause damage to multicellular cell organelles. The use of fluoride in toothpaste in low concentrations is very beneficial, but the accumulation of fluoride due to continuous use raises concerns.45 According to Tang et al, 2019 fluoride has a level of resistance to the cas3 gene that is expressed by the biofilm-forming bacteria Streptococcus mutans modifications to fluoride are needed to target cas3 so as to reduce resistance.46

Antibiotics as MurA Enzyme Inhibitors

Various antibiotics target the destruction of the bacterial cell wall that holds the cell unit together. The main component of the bacterial cell wall is peptidoglycan, which is composed of a layer of disaccharides crosslinked with amino acids through peptide bonds.47 Peptidoglycan is synthesized by a series of biological mechanisms in the cytoplasm, member and periplasm catalyzed by Mur (Muramidase) enzymes.48 As well as caries-causing bacteria S. mutans synthesize peptidoglycan with the help of the enzyme Mur.49 The enzymes MurA and MurB transfer PEP (phosphoenolvirupat) which converts UDP-GlcNac (uridine diphosphate-N-acetylglucosamine) into (uridine diphosphate-N-acetylmuramyl-pentapeptide) UDP-MurNAc.50 UDP-MurNAc is then called the substrate to which the amino acids L-ala, D-Glu, L-Lys and D-Ala-D-Ala will be attached with the help of the enzymes MurC, MurD, MurE and MurF (shown in Figure 5). The amino acids on the substrate crosslink with the disaccharide to form a peptidoglycan. The enzyme MurA has been recognized as an important factor in peptidoglycan synthesis and is a target in antibiotic discovery.51

Figure 5 Peptidoglycan formation mechanism. The MurA enzyme catalyzes the initial phase of peptidoglycan synthesis, making it a potential target for antibiotics to prevent bacterial cell wall formation.47

Secondary Metabolites as Caries Antibacterials

Flavonoids

Flavonoids are a class of secondary metabolites that have three distinctive rings. Flavonoid structures are classified into flavanone, flavanone, isoflavone, dihydroflavanol, flavonols, flavan-3,4-diol, flavan-3-ol and anthocyanins.52 The fruitful structure makes flavonoids have antibacterial activity against Gram-positive and Gram-negative bacteria. The mechanism of flavonoid inhibition is through the interaction of hydroxy groups with bacterial proteins that are very important in metabolisms such as with topoisomerase, helicase, and DNA gyrase proteins.53 This is based on the ability to transfer electrons and stabilize the core structure.17,52,54–56

Terpenoids

Terpenoids have antibacterial activity against oral pathogens by damaging bacterial cell membranes.56–59 Damaged cell membranes evidenced by protein release from oral bacterial cell membranes.60

Alkaloids

Alkaloids inhibit the formation of peptidoglycan which causes damage to the bacterial cell wall. Alkaloids are known to have antibacterial activity against oral pathogens such as S. mutans and P. gingivalis.59–63

Phenolic

Phenolic group compounds have antibacterial activity that causes dental caries.64,65 The antibacterial mechanism of the phenolic group by damaging the bacterial cell wall. The hydroxy group bound to the benzene ring allows the release of hydrogen atoms that will interact with the membrane wall and changes in membrane permeability occur.64–67

Saponins

The saponin group has anti-inflammatory, anticancer and antibacterial therapeutic activities. As antibacterial saponins damage bacterial cells, causing cell death. Pathogenic oral bacteria such as P. gingivalis that cause caries and bad breath can be inhibited by this group.67–71

Tannins

Tannins have diverse pharmacological activities due to their fertile structure. As oral antibacterial agents, tannins have the ability to inhibit quorum sensing and biofilm formation. Through the mechanism of inhibiting cell wall synthesis, member lysis and inhibiting the enzyme gluconastransferase, tannins can inhibit the formation of biofilms.72–74

Black Cumin (Nigella sativa Linn.)

Black cumin (Nigella sativa Linn.) is a plant from the Ranunculaceae family that is widely cultivated in Asia, Europe, Africa and the Americas.75 Native to the middle and far eastern regions, N. sativa seeds have abundant ethnopharmacology.76,77 Anti-inflammatory, antioxidant, cardiovascular, anticancer, antibacterial and antifungal are some of the known pharmacological activities of N. sativa.75,78 Black cumin seeds have been widely used traditionally to treat cancer, mental disorders and treat bacterial-induced diseases.79 In various parts of the world, black cumin seeds have been consumed as a safe spice that has immune-boosting properties.80 Ethnopharmacology is supported by secondary metabolite compounds contained in black cumin seeds. Alkaloids, polyphenols, phytosterols, terpenes, terpenoids and essential oils are secondary metabolites in N. sativa.81

Secondary Metabolites Nigella sativa Linn

Volatile Compound

Samples of N. sativa seeds from Bangladesh and India were analyzed for volatile compound components using GC-MS. A total of 200 g of black cumin seeds were ground and dried at 40 ºC. The powder was analyzed using GC-MS A Hewlett-Packard (HP) 6890 Series II with FID detector and helium carrier gas. The analysis revealed volatile compounds octanoic acid, thymoquinone, thymol, p-cymene, maculosin, hygrine, ethyl ester and 2-monomyristin with main components thymoquinone, thymol and p-cymene are as shown in Figure 6.82 Volatile compounds from N. sativa seed extracts have oral antibacterial activity as on S. aureus and P. aeruginosa.79,83

Figure 6 Major volatile compounds of Nigella sativa Linn. oil, octanoic acid (1), thymoquinone (2), thymol (3), p-cymene (4), maculosin (5), hygrine (6), ethyl ester (7), 2-monomyristin (8).6,82,84–88

Polyphenols

Polyphenols were isolated from methanol and acetone extracts of N. sativa seeds. Separation using HPLC system variant pro-star model 230 with reversed-phase column. Eluents used were acetonitrile and glacial acetic acid with a 5% gradient. The methanol extract contained more polyphenol components than the acetone extract with concentrations of 13,714 and 0.5962 mg/g, respectively.89 Polyphenolic compounds that were successfully isolated were reported by Enomoto et al was 2-(2-methoxy propyl)-5-methyl-1,4-benzenediol is shown in Figure 7.90

Figure 7 Structure polyphenols of 2-(2-methoxy propyl)-5-methyl-1,4-benzenediol.90

Terpenoids

Terpenoids are a class of nonpolar compounds obtained from N. sativa L. seed oil are shown in Figure 8. Isolation of compounds can be done using preparative chromatography and open column chromatography. The oil from the refined seeds was extracted using the hydro-distillation method and columnized with the norm phase with the solvent n-hexanes-diethyl ether.92

Figure 8 Terpenoid structures of N. sativa isolates cycloart-23-methyl-7,20,22-triene-3b, 30-diol (1) and cycloart-3-one-7,22-diene-24-ol (2).96

Alkaloids

Alkaloids were obtained from the polar fraction of N. sativa seed extracted using methanol-water 3:1. The dried polar fraction was analyzed using UPLC-C8-FT-MS/MS. The polar fraction was dissolved in 2000 μL of UPLC-grade MeOH/H2O (1:1, v/v). The column used was a C18 stationary phase, using a Waters Acquity UPLC system. Mass spectra were used to analyze the polar components through fragmentation patterns via ESI (-) and ESI (+) ionization methods.94 Some of the alkaloid compounds successfully isolated from N. sativa seed are shown in Figure 9.

Figure 9 Alkaloid structures of N. sativa isolates Derivate isoqunolin (1), 6.7-dimethoxy-1-methylisoquinoline (2), Nigellidine (3), Nigellicne (4), Nigellamines ((A1: (5a) R = Ph, X = CH), (A2: (5b) R = Ph, X = (N), (A3: (5c) R = n-C5H11, X = (N), (A4: (5d) R = n-C3H7, X = (N), (A5: (5e) R = PhCH2, X = (N)), Nigellamine C (6).91,92,95,96 Nigellicine (7),93 Nigellidine (8),97,98 Strychnine (9),99 17-O-(β-D-glucopyr-anosyl)-4-O-methylnigellidine (10), nigelanoid (11), 7-O-(β-D-Glucopyranosyl)-4-O-methylnigellidin (12), nigellidine (13), 8b4-O-methylnigellidine, 8bnigeglanine (14) dan 4-O-methylnigeglanin (15).103

Saponins

Saponins can be extracted from N. sativa seeds using polar solvents such as methanol, butanol and ethanol. Saponin phytochemistry is very distinctive and can be analyzed quantitatively using TLC. The Rf (Retentions factor) value of saponins on the TLC plate is 0.8. TLC can be used in qualitative phytochemical analysis based on the Rf value.97,101,102 Isolation of saponins from butanol extract can be done by open column chromatography. From column chromatography, twelve saponin isolates were obtained and are shown in Figure 10.100

Figure 10 Saponins structure of N. sativa are R1 = β-D-Xylp-(1-3)-α-L-Rhap-(l-2)- α-L-Arap-(b. R2 = α-L-Rhap-(1-4)- β-D-Glcp-(1-6)- β-D-Glcp-(1)(1),91,103 3-O-[β-D-xylopyranosyl-(1-3)-α-L-rhamnopyranosyl-(14)-β-D-glucopyranosyl]-11-methoxy-16-hydroxy-17-acetoxy (2),104 a. R1= β-D-xylp-(1-2)- β-D-glcp-(1-b. R2= α-L-rhap-(1-4)-β-D-glcp-(1-6)-β-D-glcp-(1-flaaccidoside III (3), quercetin-3-gentiobioside (4), nigelflavonoside B (5), magnoflorine (6), nigelloside (7), quercetin sphorotrioside (8), kaempferol-3,7-diglucoside (9), kaempferol 3-O-rutinoside (10), rutin (11)100 alpha-hederin (α-HN) (12).109

Bioactivity of Extracts and Compounds of Nigella sativa Linn

Bioactivity of Nigella sativa Linn Extracts and Compounds

The content of compounds in extracts, oils and pure isolates from N. sativa seeds has been widely known and applied.106 As in the Middle East, Europe and Asia, traditional and functional applications of N. sativa seeds are very promising drugs against various diseases.107 Development of compounds in N. sativa seeds continues to be carried out to increase activity.108 N. sativa bioactivities from different countries are presented in Table 1.

Table 1 Bioactivity of N. sativa from Different Countries

Antibacterial Activity of Oral Pathogens of Nigella sativa Linn

The antibacterial activity of N. sativa seeds against oral pathogenic bacteria is very good.121 Especially the bacteria that cause caries extract and compound showed very positive activity.105,110,111,122 N. sativa extracts have a range of MIC and isolates have a range of MIC of 0.2–2048 mg/mL, while the isolate has a range of MIC at 8–16 mg/mL.123 The excellent MIC ranges are at 1–8 mg/mL.112 The data showed that isolates from N. sativa had better activity than extracts against bacteria that cause biofilms. This is a reference that N. sativa isolates have great potential as an alternative to natural anti-biofilms (presented in Table 2).

Table 2 Anti-Biofilm of N. Sativa Seed

Conclusion

N. sativa seeds contain secondary metabolites such as essential oils, alkaloids, terpenoids, polyphenols and steroids. Extracts and isolates of N. sativa seeds from various countries have anticancer, antioxidant, antibacterial and anti-inflammatory activities that have been tested in vitro. On biofilm-causing bacteria, N. sativa has excellent activity. Through this article, it can provide information that N. sativa can be used as a potential drug candidate as an anti-biofilm and antibacterial oral pathogen that causes dental caries.

Acknowledgments

The authors are grateful to Research Grant of Penelitian Fundamental Regular (PDPFR) – Kemenristek Dikti 2023, Academic Leadership Grant Universitas Padjadjaran 2024, and to Universitas Padjadjaran for all research facilities.

Author Contributions

All authors made a significant contribution to the work reported, whether that is in the conception, study design, execution, acquisition of data, analysis and interpretation, or in all these areas; took part in drafting, revising or critically reviewing the article; gave final approval of the version to be published; have agreed on the journal to which the article has been submitted; and agree to be accountable for all aspects of the work.

Disclosure

The authors declare no conflicts of interest.

References

1. Kay JG, Kramer JM, Visser MB. Danger signals in oral cavity-related diseases. J Leukoc Biol. 2019;106(1):193–200. doi:10.1002/JLB.4MIR1118-439R

2. Voidarou C, Antoniadou M, Rozos G, et al. An in vitro study of different types of Greek honey as potential natural antimicrobials against dental caries and other oral pathogenic microorganisms. Case study simulation of oral cavity conditions. Appl Sci. 2021;11(14). doi:10.3390/app11146318

3. Niu Y, Wang K, Zheng S, et al. Antibacterial effect of caffeic acid phenethyl ester on cariogenic bacteria and streptococcus mutans biofilms. Antimicrob Agents Chemother. 2020;64(9). doi:10.1128/AAC.00251-20

4. Javed S, Zakirulla M, Baig RU, Asif SM, Meer AB. Development of artificial neural network model for prediction of post-streptococcus mutans in dental caries. Comput Methods Programs Biomed. 2020;186. doi:10.1016/j.cmpb.2019.105198

5. Cheng L, Zhang L, Yue L, et al. Expert consensus on dental caries management. Int J Oral Sci. 2022;14(1). doi:10.1038/s41368-022-00167-3

6. Pachaiappan R, Nagasathiya K, Singh PK, et al. Phytochemical profile of black cumin (Nigella sativa L.) seed oil: identification of bioactive anti-pathogenic compounds for traditional Siddha formulation. Biomass Convers Biorefin. 2022. doi:10.1007/s13399-022-02951-x

7. Hannan MA, Rahman MA, Sohag AAM, et al. Black cumin (Nigella sativa l.): a comprehensive review on phytochemistry, health benefits, molecular pharmacology, and safety. Nutrients. 2021;13(6):1784. doi:10.3390/nu13061784

8. Biswas A, Ahmed T, Rana MR, et al. Fabrication and Characterization of ZnO nanoparticles-based biocomposite films prepared using carboxymethyl cellulose, taro mucilage, and black cumin seed oil for evaluation of antioxidant and antimicrobial activities. Agronomy. 2023;13(1):147. doi:10.3390/agronomy13010147

9. Adegbeye MJ, Elghandour MMMY, Faniyi TO, et al. Antimicrobial and antihelminthic impacts of black cumin, pawpaw and mustard seeds in livestock production and health. Agrofor Syst. 2020;94(4):1255–1268. doi:10.1007/s10457-018-0337-0

10. Kolayli S, Kazaz G, Özkök A, et al. The phenolic composition, aroma compounds, physicochemical and antimicrobial properties of Nigella sativa L. (black cumin) honey. Eur Food Res Technol. 2023;249(3):653–664. doi:10.1007/s00217-022-04160-2

11. Al-Khalifa KS, Alsheikh R, Al-Hariri MT, et al. Evaluation of the antimicrobial effect of thymoquinone against different dental pathogens: an in vitro study. Molecules. 2021;26(21):6451. doi:10.3390/molecules26216451

12. Aqawi M, Sionov RV, Gallily R, Friedman M, Steinberg D. Anti-Bacterial Properties of Cannabigerol Toward Streptococcus mutans. Front Microbiol. 2021;12. doi:10.3389/fmicb.2021.656471

13. Bedoya-Correa CM, Rincón Rodríguez RJ, Parada-Sanchez MT. Genomic and phenotypic diversity of Streptococcus mutans. J Oral Biosci. 2019;61(1):22–31. doi:10.1016/j.job.2018.11.001

14. Zhang Q, Ma Q, Wang Y, Wu H, Zou J. Molecular mechanisms of inhibiting glucosyltransferases for biofilm formation in Streptococcus mutans. Int J Oral Sci. 2021;13(1). doi:10.1038/s41368-021-00137-1

15. Lemos JA, Palmer SR, Zeng L, et al. The Biology of Streptococcus mutans. Microbiol Spectr. 2019;7(1). doi:10.1128/microbiolspec.gpp3-0051-2018

16. Barma MD, Muthupandiyan I, Samuel SR, Amaechi BT. Inhibition of Streptococcus mutans, antioxidant property and cytotoxicity of novel nano-zinc oxide varnish. Arch Oral Biol. 2021;126. doi:10.1016/j.archoralbio.2021.105132

17. Bin C, Al-Dhabi NA, Esmail GA, Arokiyaraj S, Arasu MV. Potential effect of Allium sativum bulb for the treatment of biofilm forming clinical pathogens recovered from periodontal and dental caries. Saudi J Biol Sci. 2020;27(6):1428–1434. doi:10.1016/j.sjbs.2020.03.025

18. Lin Y, Chen J, Zhou X, Li Y. Inhibition of Streptococcus mutans biofilm formation by strategies targeting the metabolism of exopolysaccharides. Crit Rev Microbiol. 2021;47(5):667–677. doi:10.1080/1040841X.2021.1915959

19. Barran-Berdon AL, Ocampo S, Haider M, et al. Enhanced purification coupled with biophysical analyses shows cross-β structure as a core building block for Streptococcus mutans functional amyloids. Sci Rep. 2020;10(1). doi:10.1038/s41598-020-62115-7

20. Chen D, Cao Y, Yu L, et al. Characteristics and influencing factors of amyloid fibers in S. mutans biofilm. AMB Express. 2019;9(1). doi:10.1186/s13568-019-0753-1

21. Iversen KH, Rasmussen LH, Al-Nakeeb K, et al. Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii. Sci Rep. 2020;10(1). doi:10.1038/s41598-020-59549-4

22. Treerat P, Redanz U, Redanz S, Giacaman RA, Merritt J, Kreth J. Synergism between Corynebacterium and Streptococcus sanguinis reveals new interactions between oral commensals. Isme J. 2020;14(5):1154–1169. doi:10.1038/s41396-020-0598-2

23. Redanz U, Redanz S, Treerat P, et al. Differential response of oral mucosal and gingival cells to Corynebacterium durum, Streptococcus sanguinis, and Porphyromonas gingivalis multispecies biofilms. Front Cell Infect Microbiol. 2021:11. doi:10.3389/fcimb.2021.686479

24. Díaz-Garrido N, Lozano CP, Kreth J, Giacaman RA. Extended biofilm formation time by Streptococcus sanguinis modifies its non-cariogenic behavior, in vitro. Braz Oral Res. 2022;36:e107. doi:10.1590/1807-3107bor-2022.vol36.0107

25. Lyu X, Wang L, Shui Y, et al. Ursolic acid inhibits multi-species biofilms developed by Streptococcus mutans, Streptococcus sanguinis, and Streptococcus gordonii. Arch Oral Biol. 2021:125. doi:10.1016/j.archoralbio.2021.105107

26. Cui G, Li P, Wu R, Lin H. Streptococcus mutans membrane vesicles inhibit the biofilm formation of Streptococcus gordonii and Streptococcus sanguinis. AMB Express. 2022;12(1). doi:10.1186/s13568-022-01499-3

27. Martini AM, Moricz BS, Ripperger AK, et al. Association of novel streptococcus sanguinis virulence factors with pathogenesis in a native valve infective endocarditis model. Front Microbiol. 2020:11. doi:10.3389/fmicb.2020.00010

28. Martini AM, Moricz BS, Woods LJ, Jones BD. Type IV Pili of Streptococcus sanguinis Contribute to Pathogenesis in Experimental Infective Endocarditis. Microbiol Spectr. 2021;9(3). doi:10.1128/spectrum.01752-21

29. Li X, Bosch-Tijhof CJ, Wei X, et al. Efficiency of chemical versus mechanical disruption methods of DNA extraction for the identification of oral Gram-positive and Gram-negative bacteria. J Int Med Res. 2020;48(5). doi:10.1177/0300060520925594

30. Belibasakis GN, Maula T, Bao K, et al. Virulence and pathogenicity properties of Aggregatibacter actinomycetemcomitans. Pathogens. 2019;8(4). doi:10.3390/pathogens8040222

31. Danforth DR, Melloni M, Tristano J, Mintz KP. Contribution of adhesion proteins to Aggregatibacter actinomycetemcomitans biofilm formation. Mol Oral Microbiol. 2021;36(4):243–253. doi:10.1111/omi.12346

32. Lindholm M, Min Aung K, Nyunt Wai S, Oscarsson J. Role of OmpA1 and OmpA2 in Aggregatibacter actinomycetemcomitans and Aggregatibacter aphrophilus serum resistance. J Oral Microbiol. 2019;11(1). doi:10.1080/20002297.2018.1536192

33. Hutchings M, Truman A, Wilkinson B. Antibiotics: past, present and future. Curr Opin Microbiol. 2019;51:72–80. doi:10.1016/j.mib.2019.10.008

34. Butler MS, Paterson DL. Antibiotics in the clinical pipeline in October 2019. J Antibiotics. 2020;73(6):329–364. doi:10.1038/s41429-020-0291-8

35. Danner MC, Robertson A, Behrends V, Reiss J. Antibiotic pollution in surface fresh waters: occurrence and effects. Science of the Total Environment. 2019;664:793–804. doi:10.1016/j.scitotenv.2019.01.406

36. Ganapathy US, Dartois V, Dick T. Repositioning rifamycins for Mycobacterium abscessus lung disease. Expert Opin Drug Discov. 2019;14(9):867–878. doi:10.1080/17460441.2019.1629414

37. Adams RA, Leon G, Miller NM, et al. Rifamycin antibiotics and the mechanisms of their failure. J Antibiotics. 2021;74(11):786–798. doi:10.1038/s41429-021-00462-x

38. Sanchez CJ, Shiels SM, Tennent DJ, Hardy SK, Murray CK, Wenke JC. Rifamycin derivatives are effective against staphylococcal biofilms in vitro and elutable from PMMA. Clin Orthop Relat Res. 2015;473(9):2874–2884. doi:10.1007/s11999-015-4300-3

39. Huttner A, Bielicki J, Clements MN, et al. Oral amoxicillin and amoxicillin–clavulanic acid: properties, indications and usage. Clin Microbiol Infect. 2020;26(7):871–879. doi:10.1016/j.cmi.2019.11.028

40. Araújo Júnior AG, Costa ML, Silva FRP, et al. Amoxicillin-resistant streptococci carriage in the mouths of children: a systematic review and meta-analysis. Pathogens. 2022;11(10):1114. doi:10.3390/pathogens11101114

41. Rebitski EP, Souza GP, Santana SAA, Pergher SBC, Alcântara ACS. Bionanocomposites based on cationic and anionic layered clays as controlled release devices of amoxicillin. Appl Clay Sci. 2019;173:35–45. doi:10.1016/j.clay.2019.02.024

42. Brookes ZLS, Belfield LA, Ashworth A, et al. Effects of chlorhexidine mouthwash on the oral microbiome. J Dent. 2021:113. doi:10.1016/j.jdent.2021.103768

43. Huang S, Wu M, Li Y, et al. The dlt operon contributes to the resistance to chlorhexidine in Streptococcus mutans. Int J Antimicrob Agents. 2022;59(3):106540. doi:10.1016/j.ijantimicag.2022.106540

44. Taghdisi-Kashani A, Gholamshahi A, Fathizadeh H, et al. Antimicrobial activity of children’s toothpaste on the bacteria causing dental caries. Iranian J Med Microbiol. 2022;16(5):399–404. doi:10.30699/ijmm.16.5.399

45. Hassan M, Shafique F, Bhutta H, et al. A comparative study to evaluate the effects of antibiotics, plant extracts and fluoride-based toothpaste on the oral pathogens isolated from patients with gum diseases in Pakistan. Braz J Biol. 2023:83. doi:10.1590/1519-6984.242703

46. Tang B, Gong T, Zhou X, et al. Deletion of cas3 gene in Streptococcus mutans affects biofilm formation and increases fluoride sensitivity. Arch Oral Biol. 2019;99:190–197. doi:10.1016/j.archoralbio.2019.01.016

47. Miyachiro MM, Granato D, Trindade DM, Ebel C, Paes Leme AF, Dessen A. Complex formation between mur enzymes from streptococcus pneumoniae. Biochemistry. 2019;58(30):3314–3324. doi:10.1021/acs.biochem.9b00277

48. El Zoeiby A, Sanschagrin F, Levesque RC. Structure and function of the Mur enzymes: development of novel inhibitors. Mol Microbiol. 2003;47(1):1–12. doi:10.1046/j.1365-2958.2003.03289.x

49. Li H, Zhou Y, Wang N, Xin Y, Tang L, Ma Y. Identification and Characterization of a MurA, UDP-N-acetylglucosamine enolpyruvyl transferase from cariogenic streptococcus mutans; 2012.

50. Chabán MF, Hrast M, Frlan R, Graikioti DG, Athanassopoulos CM, Carpinella MC. Inhibition of mura enzyme from Escherichia coli and Staphylococcus aureus by diterpenes from lepechinia meyenii and their synthetic analogs. Antibiotics. 2021;10(12). doi:10.3390/antibiotics10121535

51. Hrast M, Frlan R, Knez D, Zdovc I, Barreteau H, Gobec S. Mur ligases inhibitors with azastilbene scaffold: expanding the structure–activity relationship. Bioorg Med Chem Lett. 2021;40. doi:10.1016/j.bmcl.2021.127966

52. Dias MC, Pinto DC, Silva AMS. Plant flavonoids: chemical characteristics and biological activity. Molecules. 2021;26(17). doi:10.3390/molecules26175377

53. Donadio G, Mensitieri F, Santoro V, et al. Interactions with microbial proteins driving the antibacterial activity of flavonoids. Pharmaceutics. 2021;13(5):660. doi:10.3390/pharmaceutics13050660

54. Gutiérrez-Venegas G, Gómez-Mora JA, Meraz-Rodríguez MA, Flores-Sánchez MA, Ortiz-Miranda LF. Effect of flavonoids on antimicrobial activity of microorganisms present in dental plaque. Heliyon. 2019;5(12):e03013. doi:10.1016/j.heliyon.2019.e03013

55. Socorro Chagas MS D, Behrens MD, Moragas-Tellis CJ, Penedo GXM, Silva AR, Gonçalves-de-albuquerque CF. Flavonols and flavones as potential anti-inflammatory, antioxidant, and antibacterial compounds. Oxid Med Cell Longev. 2022;2022. doi:10.1155/2022/9966750

56. Liang J, Huang X, Ma G. Antimicrobial activities and mechanisms of extract and components of herbs in East Asia. RSC Adv. 2022;12(45):29197–29213. doi:10.1039/d2ra02389j

57. Machorowska-Pieniążek A, Morawiec T, Olek M, et al. Advantages of using toothpaste containing propolis and plant oils for gingivitis prevention and oral cavity hygiene in cleft lip/palate patients. Biomed Pharmacother. 2021:142. doi:10.1016/j.biopha.2021.111992

58. Milutinovici RA, Chioran D, Buzatu R, et al. Vegetal compounds as sources of prophylactic and therapeutic agents in dentistry. Plants. 2021;10(10):2148. doi:10.3390/plants10102148

59. Ito Y, Ito T, Yamashiro K, et al. Antimicrobial and antibiofilm effects of abietic acid on cariogenic Streptococcus mutans. Odontology. 2020;108(1):57–65. doi:10.1007/s10266-019-00456-0

60. Moraes da TS, Leandro LF, Santiago MB, et al. Assessment of the antibacterial, antivirulence, and action mechanism of Copaifera pubiflora oleoresin and isolated compounds against oral bacteria. Biomed Pharmacother. 2020:129. doi:10.1016/j.biopha.2020.110467

61. Bhagavathy S, Mahendiran C, Kanchana R. Identification of glucosyl transferase inhibitors from Psidium guajava against Streptococcus mutans in dental caries. J Tradit Complement Med. 2019;9(2):124–137. doi:10.1016/j.jtcme.2017.09.003

62. Egra S, Kuspradini H, Kusuma IW, Batubara I, Yamauchi K, Mitsunaga T. Garcidepsidone B from Garcinia parvifolia: antimicrobial activities of the medicinal plants from East and North Kalimantan against dental caries and periodontal disease pathogen. Med Chem Res. 2023;32(8):1658–1665. doi:10.1007/s00044-023-03071-5

63. Putri Adhiningtyas A, Khoswanto C, Luthfi M. Inhibitory potency of butterfly pea (Clitoria ternatea Linn.) extract against the growth of Streptococcus mutans. World J Advan Res Rev. 2023;17(1):150–156. doi:10.30574/wjarr.2023.17.1.1474

64. Barrera C, Betoret N, Seguí L. Phenolic profile of cane sugar derivatives exhibiting antioxidant and antibacterial properties. Sugar Tech. 2020;22(5):798–811. doi:10.1007/s12355-020-00817-y

65. Pavlović T, Dimkić I, Andrić S, et al. Linden tea from Serbia – an insight into the phenolic profile, radical scavenging and antimicrobial activities. Ind Crops Prod. 2020:154. doi:10.1016/j.indcrop.2020.112639

66. Ochoa C, Solinski AE, Nowlan M, Dekarske MM, Wuest WM, Kozlowski MC. A bisphenolic honokiol analog outcompetes oral antimicrobial agent cetylpyridinium chloride via a membrane-associated mechanism. ACS Infect Dis. 2020;6(1):74–79. doi:10.1021/acsinfecdis.9b00190

67. Domínguez-Avila JA, Villa-Rodriguez JA, Montiel-Herrera M, et al. Phenolic compounds promote diversity of gut microbiota and maintain colonic health. Dig Dis Sci. 2021;66(10):3270–3289. doi:10.1007/s10620-020-06676-7

68. Efenberger-Szmechtyk M, Nowak A, Czyzowska A. Plant extracts rich in polyphenols: antibacterial agents and natural preservatives for meat and meat products. Crit Rev Food Sci Nutr. 2021;61(1):149–178. doi:10.1080/10408398.2020.1722060

69. Jolly A, Kim H, Moon JY, Mohan A, Lee YC. Exploring the imminent trends of saponins in personal care product development: a review. Ind Crops Prod. 2023;205:117489. doi:10.1016/j.indcrop.2023.117489

70. Ayyanaar S, Kesavan MP. One-pot biogenic synthesis of gold nanoparticles@saponins niosomes: sustainable nanomedicine for antibacterial, anti-inflammatory and anticancer therapeutics. Colloids Surf a Physicochem Eng Asp. 2023;676:132229. doi:10.1016/j.colsurfa.2023.132229

71. Sun X, Yang X, Xue P, Zhang Z, Ren G. Improved antibacterial effects of alkali-transformed saponin from quinoa husks against halitosis-related bacteria. BMC Complement Altern Med. 2019;19(1). doi:10.1186/s12906-019-2455-2

72. Schestakow A, Hannig M. Effects of experimental agents containing Tannic acid or Chitosan on the bacterial biofilm formation in situ. Biomolecules. 2020;10(9):1–17. doi:10.3390/biom10091315

73. Farha AK, Yang QQ, Kim G, et al. Tannins as an alternative to antibiotics. Food Biosci. 2020:38. doi:10.1016/j.fbio.2020.100751

74. Schestakow A, Guth MS, Eisenmenger TA, Hannig M. Evaluation of anti-biofilm activity of mouthrinses containing tannic acid or chitosan on dentin in situ. Molecules. 2021;26(5):1351. doi:10.3390/molecules26051351

75. Yagoub SO. Chapter four - Black cumin: morphology, physiology, growth, and agricultural yield. In: Mariod AA editor. Biochemistry, Nutrition, and Therapeutics of Black Cumin Seed. Academic Press; 2023:19–25. doi:10.1016/B978-0-323-90788-0.00016-0

76. Burdock GA. Assessment of black cumin (Nigella sativa L.) as a food ingredient and putative therapeutic agent. Regul Toxicol Pharmacol. 2022;128:105088. doi:10.1016/j.yrtph.2021.105088

77. Islam MN, Hossain KS, Sarker PP, et al. Revisiting pharmacological potentials of Nigella sativa seed: a promising option for COVID-19 prevention and cure. Phytother Res. 2021;35(3):1329–1344. doi:10.1002/ptr.6895

78. Nyemb JN, Shaheen H, Wasef L, Nyamota R, Segueni N, El-Saber Batiha G. Black cumin: a review of its pharmacological effects and its main active constituent. Pharmacogn Rev. 2022;16(32):107–125. doi:10.5530/phrev.2022.16.16

79. Yimer EM, Tuem KB, Karim A, Ur-Rehman N, Anwar F, Nigella Sativa L. (Black Cumin): a promising natural remedy for wide range of illnesses. Evid Based Complement Alternat Med. 2019;2019:1–16. doi:10.1155/2019/1528635

80. Padhye S, Banerjee S, Ahmad A, Mohammad R, Sarkar FH. From here to eternity-the secret of pharaohs: therapeutic potential of black cumin seeds and Beyond. Cancer Therapy. 2008;6(b):495.

81. Yuan G, Guan Y, Yi H, Lai S, Sun Y, Cao S. Antibacterial activity and mechanism of plant flavonoids to gram-positive bacteria predicted from their lipophilicities. Sci Rep. 2021;11(1). doi:10.1038/s41598-021-90035-7

82. Kabir Y, Akasaka-Hashimoto Y, Kubota K, Komai M. Volatile compounds of black cumin (Nigella sativa L.) seeds cultivated in Bangladesh and India. Heliyon. 2020;6(10):e05343. doi:10.1016/j.heliyon.2020.e05343

83. Albakry Z, Karrar E, Mohamed Ahmed IA, et al. Nutritional composition and volatile compounds of black cumin (Nigella sativa L.) seed, fatty acid composition and tocopherols, polyphenols, and antioxidant activity of its essential oil. Horticulturae. 2022;8(7). doi:10.3390/horticulturae8070575

84. Dey BK, Hossain MMM, Alam ME. Effect of black cumin seed oil on growth, innate immunity and resistance against Pseudomonas fluorescens infection in Nile tilapia Oreochromis niloticus. Aquacult Int. 2020;28(4):1485–1499. doi:10.1007/s10499-020-00539-8

85. Habib N, Choudhry S. HPLC quantification of thymoquinone extracted from nigella sativa L. (Ranunculaceae) seeds and antibacterial activity of its extracts against bacillus species. Evid Based Complement Alternat Med. 2021;2021. doi:10.1155/2021/6645680

86. Kiari FZ, Meddah B, Tir Touil Meddah A. In vitro study on the activity of essential oil and methanolic extract from Algerian Nigella sativa L. Seeds on the growth kinetics of micro-organisms isolated from the buccal cavities of periodontal patients. Saudi Dent J. 2018;30(4):312–323. doi:10.1016/j.sdentj.2018.05.011

87. Kazemi M. Phytochemical Composition, Antioxidant, Anti-inflammatory and Antimicrobial Activity of Nigella sativa L. Essential Oil. J Essent Oil Bear Plants. 2014;17(5):1002–1011. doi:10.1080/0972060X.2014.914857

88. Baaliouamer A, Benkaci-Ali F, Meklati BY, Chemat F. Chemical composition of seed essential oils from Algerian Nigella sativa extracted by microwave and hydrodistillation. J Basel. 2007;22:148–153. doi:10.1002/ffj

89. Mechraoui O, Ladjel S, Said Nedjimi M, Lakhdar Belfar M, Moussaoui Y. Determination of polyphenols content, antioxidant and antibacterial activity of nigella sativa L. Seed PhenExtrac. 2018;19:1.

90. Enomoto S, Asano R, Iwahori Y, et al. Hematological Studies on Black Cumin Oil from the Seeds of Nigella sativa L. Pharmac Soc Japan. 2001;24(3):307–310.

91. Akram Khan M. Chemical composition and medicinal properties of nigella sativa linn; 1999.

92. Bourgou S, Pichette A, Lavoie S, Marzouk B, Legault J. Terpenoids isolated from Tunisian Nigella sativa L. essential oil with antioxidant activity and the ability to inhibit nitric oxide production. Flavour Fragr J. 2012;27(1):69–74. doi:10.1002/ffj.2085

93. Liu X, El-Aty AM A, Shim JH. Various extraction and analytical techniques for isolation and identification of secondary metabolites from nigella sativa seeds. Mini Reviews in Med Chem. 2011;11:947–955. doi:10.2174/138955711797068472

94. Salem MA, El-Shiekh RA, Aborehab NM, et al. Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity. Food Chem. 2023;398:133906. doi:10.1016/j.foodchem.2022.133906

95. Akram Khan M, Afzal M. Chemical composition of Nigella sativa Linn: part 2 Recent advances. Inflammopharmacology. 2016;24(2–3):67–79. doi:10.1007/s10787-016-0262-7

96. Mehta BK, Sharma U, Agrawal S, Pandit V, Joshi N, Gupta M. Isolation and characterization of new compounds from seeds of Nigella sativa. Med Chem Res. 2008;17:462–473. doi:10.1007/s00044-007-9080-1

97. Imran M, Khan SA. Nigella sativa L. and COVID-19: a Glance at The Anti-COVID-19 chemical constituents, clinical trials, inventions, and patent literature. Molecules. 2022;27(9):2750. doi:10.3390/molecules27092750

98. Ali BH, Blunden G. Pharmacological and toxicological properties of Nigella sativa. Phytother Res. 2003;17(4):299–305. doi:10.1002/ptr.1309

99. Veeramani S, Narayanan AP, Yuvaraj K, et al. Nigella sativa flavonoids surface coated gold NPs (Au-NPs) enhancing antioxidant and anti-diabetic activity. Process Biochem. 2022;114:193–202. doi:10.1016/j.procbio.2021.01.004

100. Parveen A, Farooq MA, Kyunn WW. A new oleanane type saponin from the aerial parts of nigella sativa with anti-oxidant and anti-diabetic potential. Molecules. 2020;25(9):2171. doi:10.3390/molecules25092171

101. Zafar I, Safder A, Imran Afridi H, et al. In silico and in vitro study of bioactive compounds of Nigella sativa for targeting neuropilins in breast cancer. Front Chem. 2023:11. doi:10.3389/fchem.2023.1273149

102. Rathi B, Devanesan S, AlSalhi MS, Ranjith Singh AJ. In-vitro free radical scavenging effect and cytotoxic analysis of Black Cummins and Honey formulation. Saudi J Biol Sci. 2021;28(3):1576–1581. doi:10.1016/j.sjbs.2020.12.051

103. Yuan T, Nahar P, Sharma M, et al. Indazole-type alkaloids from nigella sativa seeds exhibit antihyperglycemic effects via AMPK activation in vitro. J Nat Prod. 2014;77(10):2316–2320. doi:10.1021/np500398m

104. Mehta BK, Mehta P, Gupta M. A new naturally acetylated triterpene saponin from Nigella sativa. Carbohydr Res. 2009;344(1):149–151. doi:10.1016/j.carres.2008.10.004

105. Karaman K. Characterization of Saccharomyces cerevisiae based microcarriers for encapsulation of black cumin seed oil: stability of thymoquinone and bioactive properties. Food Chem. 2020;313. doi:10.1016/j.foodchem.2019.126129

106. Almatroudi A, Khadri H, Azam M, et al. Antibacterial, antibiofilm and anticancer activity of biologically synthesized silver nanoparticles using seed extract of Nigella sativa. Processes. 2020;8(4):388. doi:10.3390/PR8040388

107. Salehi B, Quispe C, Imran M, et al. Nigella plants – traditional uses, bioactive phytoconstituents, preclinical and clinical studies. Front Pharmacol. 2021:12. doi:10.3389/fphar.2021.625386

108. Lin J, Gulbagca F, Aygun A, et al. Phyto-mediated synthesis of nanoparticles and their applications on hydrogen generation on NaBH4, biological activities and photodegradation on azo dyes: development of machine learning model. Food and Chemical Toxicology. 2022;163:112972. doi:10.1016/j.fct.2022.112972

109. Adamska A, Stefanowicz-Hajduk J, Renata Ochocka J. Alpha-hederin, the active saponin of nigella sativa, as an anticancer agent inducing apoptosis in the SKOV-3 cell line. Molecules. 2019;24(16):2958. doi:10.3390/molecules24162958

110. Bourgou S, Pichette A, Marzouk B, Legault J. Bioactivities of black cumin essential oil and its main terpenes from Tunisia. S Afr J Bot. 2010;76(2):210–216. doi:10.1016/j.sajb.2009.10.009

111. Bourgou S, Rebey IB, Ben KS, et al. Green solvent to substitute hexane for bioactive lipids extraction from black cumin and basil seeds. Foods. 2021;10(7):1493. doi:10.3390/foods10071493

112. Hameed S, Imran A, Nisa M, et al. Characterization of extracted phenolics from black cumin (Nigella sativa linn), coriander seed (Coriandrum sativum L.), and fenugreek seed (Trigonella foenum-graecum). Int J Food Prop. 2019;22(1):714–726. doi:10.1080/10942912.2019.1599390

113. Soleimanifar M, Niazmand R, Jafari SM. Evaluation of oxidative stability, fatty acid profile, and antioxidant properties of black cumin seed oil and extract. J Food Meas Characteriz. 2019;13(1):383–389. doi:10.1007/s11694-018-9953-7

114. Shaheed KA, Alsirraj MA, Allaith SA, et al. The biological activities of seeds extracts for fenugreek and black cumin and its inhibitory influences toward some pathogens; 2018. Available from: https://pubchem.ncbi.nlm.nih.gov/com-. Accessed May 06, 2024.

115. Dalli M, Azizi SE, Kandsi F, Gseyra N. Evaluation of the in vitro antioxidant activity of different extracts of Nigella sativa L. seeds, and the quantification of their bioactive compounds. In: Materials Today: Proceedings; 2021:7259–7263. doi:10.1016/j.matpr.2020.12.743.

116. Ramadan MF, Asker MMS, Tadros M. Antiradical and antimicrobial properties of cold-pressed black cumin and cumin oils. Eur Food Res Technol. 2012;234(5):833–844. doi:10.1007/s00217-012-1696-9

117. Feng Y, Dunshea FR, Suleria HAR. LC-ESI-QTOF/MS characterization of bioactive compounds from black spices and their potential antioxidant activities. J Food Sci Technol. 2020;57(12):4671–4687. doi:10.1007/s13197-020-04504-4

118. Albakry Z, Karrar E, Mohamed Ahmed IA, et al. A comparative study of black cumin seed (Nigella sativa L.) oils extracted with supercritical fluids and conventional extraction methods. J Food Meas Characteriz. 2023;17(3):2429–2441. doi:10.1007/s11694-022-01802-7

119. Ahlina FN, Anggriani L, Salsabila IA, Jenie RI. Bioactivity of black cumin oil on the senescence of her-2-overexpressing breast cancer cells. Malays App Bio. 2022;51(1):91–98. doi:10.55230/MABJOURNAL.V51I1.2008

120. Sutton KM, Greenshields AL, Hoskin DW. Thymoquinone, a bioactive component of black caraway seeds, causes G1 phase cell cycle arrest and apoptosis in triple-negative breast cancer cells with mutant p53. Nutr Cancer. 2014;66(3):408–418. doi:10.1080/01635581.2013.878739

121. Besra M, Kumar V. In vitro investigation of antimicrobial activities of ethnomedicinal plants against dental caries pathogens. Biotech. 2018;8(5). doi:10.1007/s13205-018-1283-2

122. Qureshi KA, Imtiaz M, Parvez A, et al. In vitro and in silico approaches for the evaluation of antimicrobial activity, time-kill kinetics, and anti-biofilm potential of thymoquinone (2-methyl-5-propan-2-ylcyclohexa-2, 5-diene-1,4-dione) against selected human pathogens. Antibiotics. 2022;11(1):79. doi:10.3390/antibiotics11010079

123. Kokoska J, Vadlejch JLF, Vadlejch JLF, Vadlejch J. The growth-inhibitory effect of thymohydroquinone and thymoquinone on oral pathogenic bacteria in vitro. Planta Med. 2009;75(09):PJ116. doi:10.1055/s-0029-1234921

124. Rusmarilin H, Lubis Z, Lubis LM, Barutu YAP. Potential of natural antioxidants of black cumin seed (Nigella sativa) and sesame seed (Sesamum indicum) extract by microencapsulation methods. In: IOP Conference Series: Earth and Environmental Science. Vol 260. Institute of Physics Publishing; 2019. doi:10.1088/1755-1315/260/1/012097.

125. Oubannin S, Bijla L, Gagour J, et al. A comparative evaluation of proximate composition, elemental profiling and oil physicochemical properties of black cumin (Nigella sativa L.) seeds and argan (Argania spinosa L. Skeels) kernels. Chem Data Collect. 2022;41:100920. doi:10.1016/j.cdc.2022.100920

126. Alamoudi RA, Alamoudi SA, Alamoudi RA. Biological potential of the main component, thymoquinone, of nigella sativa in pulp therapy—in vitro study. Life. 2022;12(9):1434. doi:10.3390/life12091434

127. Shafodino FS, Lusilao JM, Mwapagha LM. Phytochemical characterization and antimicrobial activity of Nigella sativa seeds. PLoS One. 2022;17(8):e0272457. doi:10.1371/journal.pone.0272457

128. Shabestari BN. The comparison of antimicrobial effect of nigella sativa nanoparticle and chlorhexidine emulsion on the most common dental cariogenicic bacteria; 2021.

129. Tiwari AK, Jha S, Singh AK, et al. Innovative investigation of zinc oxide nanoparticles used in dentistry. Crystals. 2022;12(8). doi:10.3390/cryst12081063

130. Rashid M, Ganaie MA, Khan S, et al. Comparative antibacterial study of black cumin oil of Saudi and Syrian origin seeds with the commercial product. J Rep Pharm Sci. 2021;10(1):148–152. doi:10.4103/jrptps.JRPTPS_118_20

131. Othman L, Sleiman A, Abdel-Massih RM. Antimicrobial activity of polyphenols and alkaloids in Middle Eastern plants. Front Microbiol. 2019;10(MAY). doi:10.3389/fmicb.2019.00911

132. Bourgou S, Pichette A, Marzouk B, Legault J. Antioxidant, anti-inflammatory, anticancer and antibacterial activities of extracts from nigella sativa (black cumin) plant parts. J Food Biochem. 2012;36(5):539–546. doi:10.1111/j.1745-4514.2011.00567.x

133. Rostinawati T, Karipaya S, Iskandar Y. Antibacterial activity of ethanol extract of nigella Sativa L. seed against streptococcus mutans. In: IOP Conference Series: Earth and Environmental Science. Institute of Physics Publishing; 2019. doi:10.1088/1755-1315/334/1/012050.

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